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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs3771570 1 rs62186411 chr2:242236667 SEPT2 chr2:242254723-242293439:+ -0.29 -4.3 2.06E-5 Prostate cancer
THCA cis rs3771570 1 rs62186422 chr2:242249499 ANO7 chr2:242127924-242164791:+ 0.36 4.22 2.97E-5 Prostate cancer
THCA cis rs3771570 1 rs62186422 chr2:242249499 SEPT2 chr2:242254723-242293439:+ -0.29 -4.3 2.06E-5 Prostate cancer
THCA cis rs3771570 1 rs62190367 chr2:242376276 ANO7 chr2:242127924-242164791:+ 0.32 3.8 0.000164 Prostate cancer
THCA cis rs3771570 1 rs62190367 chr2:242376276 SEPT2 chr2:242254723-242293439:+ -0.31 -4.57 6.31E-6 Prostate cancer
THCA cis rs3771570 1 rs62190370 chr2:242384194 ANO7 chr2:242127924-242164791:+ 0.32 3.7 0.000239 Prostate cancer
THCA cis rs3771570 1 rs62190370 chr2:242384194 SEPT2 chr2:242254723-242293439:+ -0.3 -4.49 9.03E-6 Prostate cancer
THCA cis rs3771570 1 rs62193171 chr2:242276523 ANO7 chr2:242127924-242164791:+ 0.36 4.13 4.26E-5 Prostate cancer
THCA cis rs3771570 1 rs62193171 chr2:242276523 SEPT2 chr2:242254723-242293439:+ -0.29 -4.17 3.59E-5 Prostate cancer
THCA cis rs3771570 1 rs62193175 chr2:242284405 ANO7 chr2:242127924-242164791:+ 0.36 4.13 4.26E-5 Prostate cancer
THCA cis rs3771570 1 rs62193175 chr2:242284405 SEPT2 chr2:242254723-242293439:+ -0.29 -4.17 3.59E-5 Prostate cancer
THCA cis rs3771570 1 rs62193197 chr2:242294301 ANO7 chr2:242127924-242164791:+ 0.35 4.06 5.82E-5 Prostate cancer
THCA cis rs3771570 1 rs62193197 chr2:242294301 SEPT2 chr2:242254723-242293439:+ -0.29 -4.24 2.71E-5 Prostate cancer
THCA cis rs3771570 1 rs62193202 chr2:242303717 ANO7 chr2:242127924-242164791:+ 0.37 4.19 3.3E-5 Prostate cancer
THCA cis rs3771570 1 rs62193202 chr2:242303717 SEPT2 chr2:242254723-242293439:+ -0.28 -4 7.35E-5 Prostate cancer